IQ-TREE multicore version 1.6.11 for Linux 64-bit built Jun  6 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    kronig (SSE4.2, 31 GB RAM)
Command: ../../iqtree -s Troglosironidae_COI.mafft.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    330747 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Nov  6 00:00:56 2019
Kernel:  SSE2 - 1 threads (24 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 24 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Troglosironidae_COI.mafft.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 54 sequences with 664 columns, 362 distinct patterns
281 parsimony-informative, 63 singleton sites, 320 constant sites
                               Gap/Ambiguity  Composition  p-value
   1  T_monteithi_IZ51948              1.05%    passed     91.85%
   2  T_oscitatio_IZ72572              1.05%    passed     96.38%
   3  T_oscitatio_IZ134779F            6.78%    passed     97.80%
   4  T_ninqua_IZ134768                1.05%    passed     81.40%
   5  T_brevifossa_IZ134776            1.05%    passed     89.42%
   6  T_pin_IZ133854_1                 6.48%    passed     72.19%
   7  T_pin_IZ133874_2                 6.63%    passed     74.12%
   8  T_pin_IZ133875_2                 1.05%    passed     80.01%
   9  T_pin_IZ133875_4                 1.05%    passed     80.01%
  10  T_pin_IZ133876                   1.05%    passed     80.01%
  11  T_pin_IZ133854_2                 3.77%    passed     86.76%
  12  T_pin_IZ133874_1                 1.05%    passed     79.68%
  13  T_pseudojuberthiei_IZ133855_1    1.05%    passed     99.49%
  14  T_pseudojuberthiei_IZ133855_2    1.05%    passed     99.73%
  15  T_pseudojuberthiei_IZ151618_2    1.05%    passed     99.73%
  16  T_pseudojuberthiei_IZ133855_3    1.05%    passed     99.95%
  17  T_pseudojuberthiei_IZ133856      1.05%    passed     99.73%
  18  T_pseudojuberthiei_IZ151618_1    1.05%    passed     98.08%
  19  T_pseudojuberthiei_IZ133857_5    1.05%    passed     97.90%
  20  T_pseudojuberthiei_IZ133857_6    1.05%    passed     96.08%
  21  T_pseudojuberthiei_IZ133868      1.05%    passed     96.08%
  22  T_pseudojuberthiei_IZ133857_2    1.05%    passed     99.22%
  23  T_pseudojuberthiei_IZ133857_3    1.05%    passed     97.90%
  24  T_pseudojuberthiei_IZ133857_4    1.05%    passed     94.11%
  25  T_pseudojuberthiei_IZ133870      1.05%    passed     95.30%
  26  T_pseudojuberthiei_IZ133870_5    1.05%    passed     95.30%
  27  T_cf_platnicki_IZ134766          1.05%    passed     76.98%
  28  T_cf_platnicki_IZ134786          3.16%    passed     76.14%
  29  Troglosiro_sp_IZ134781          34.04%    passed     59.26%
  30  T_juberthiei_IZ134763f           4.97%    passed     78.56%
  31  T_juberthiei_IZ134763m           1.05%    passed     73.15%
  32  T_juberthiei_IZ134767_2          1.05%    passed     73.15%
  33  T_juberthiei_IZ134767_4          1.05%    passed     73.15%
  34  T_juberthiei_IZ134767_3          1.20%    passed     72.55%
  35  T_juberthiei_IZ134767_1         15.81%    passed     81.55%
  36  T_juberthiei_IZ134767_5          1.05%    passed     74.18%
  37  T_sheari_IZ72565                 1.05%    passed     95.70%
  38  T_sheari_IZ134772                1.05%    passed     95.70%
  39  T_sharmai_IZ151558_1             3.92%    passed     99.31%
  40  T_sharmai_IZ151558_2             1.05%    passed     97.00%
  41  T_aelleni_IZ134764               1.05%    passed     78.39%
  42  T_longifossa_IZ65208             1.05%    passed     95.10%
  43  T_longifossa_IZ134764            1.05%    passed     95.10%
  44  T_urbanus_IZ134780f              1.05%    passed     98.31%
  45  T_urbanus_IZ134780m              1.05%    passed     98.31%
  46  T_wilsoni_IZ134787               2.11%    passed     49.12%
  47  T_dogny_IZ151570_1               1.05%    passed     87.49%
  48  T_dogny_IZ151570_2               1.05%    passed     87.49%
  49  T_dogny_IZ51947                  1.51%    passed     87.35%
  50  T_raveni_IZ134777                1.05%    passed      9.59%
  51  M_savannahensis_IZ134557         1.05%    passed     10.01%
  52  O_cameroonensis_IZ132315         1.05%    failed      0.00%
  53  P_gabonica_IZ132297              1.05%    failed      0.02%
  54  H_tama_IZ134691                  3.31%    failed      0.91%
****  TOTAL                            2.54%  3 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: T_pin_IZ133875_4 is identical to T_pin_IZ133875_2 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ151618_2 is identical to T_pseudojuberthiei_IZ133855_2 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133868 is identical to T_pseudojuberthiei_IZ133857_6 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133870_5 is identical to T_pseudojuberthiei_IZ133870 but kept for subsequent analysis
NOTE: T_juberthiei_IZ134767_2 is identical to T_juberthiei_IZ134763m but kept for subsequent analysis
NOTE: T_sheari_IZ134772 is identical to T_sheari_IZ72565 but kept for subsequent analysis
NOTE: T_longifossa_IZ134764 is identical to T_longifossa_IZ65208 but kept for subsequent analysis
NOTE: T_urbanus_IZ134780m is identical to T_urbanus_IZ134780f but kept for subsequent analysis
NOTE: T_dogny_IZ151570_2 is identical to T_dogny_IZ151570_1 but kept for subsequent analysis
NOTE: 2 identical sequences (see below) will be ignored for subsequent analysis
NOTE: T_pin_IZ133876 (identical to T_pin_IZ133875_2) is ignored but added at the end
NOTE: T_juberthiei_IZ134767_4 (identical to T_juberthiei_IZ134763m) is ignored but added at the end

For your convenience alignment with unique sequences printed to Troglosironidae_COI.mafft.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.006 seconds
NOTE: ModelFinder requires 7 MB RAM!
ModelFinder will test 286 DNA models (sample size: 664) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            7075.579     101 14353.157    14389.819    14807.484
  2  JC+I          6567.852     102 13339.703    13377.158    13798.528
  3  JC+G4         6494.943     102 13193.885    13231.340    13652.710
  4  JC+I+G4       6482.311     103 13170.621    13208.878    13633.944
  5  JC+R2         6549.935     103 13305.871    13344.128    13769.194
  6  JC+R3         6514.323     105 13238.645    13278.538    13710.965
  7  JC+R4         6488.783     107 13191.566    13233.135    13672.882
  8  JC+R5         6484.633     109 13187.267    13230.552    13677.580
 14  F81+F         6958.318     104 14124.635    14163.705    14592.457
 15  F81+F+I       6393.815     105 12997.630    13037.522    13469.950
 16  F81+F+G4      6237.255     105 12684.509    12724.402    13156.829
 17  F81+F+I+G4    6237.920     106 12687.840    12728.565    13164.658
 18  F81+F+R2      6344.319     106 12900.639    12941.364    13377.456
 19  F81+F+R3      6290.273     108 12796.545    12838.967    13282.360
 20  F81+F+R4      6264.855     110 12749.709    12793.868    13244.520
 21  F81+F+R5      6257.144     112 12738.288    12784.226    13242.095
 22  F81+F+R6      6257.116     114 12742.231    12789.991    13255.036
 27  K2P           7001.714     102 14207.427    14244.882    14666.252
 28  K2P+I         6487.715     103 13181.430    13219.687    13644.753
 29  K2P+G4        6404.621     103 13015.241    13053.498    13478.564
 30  K2P+I+G4      6391.239     104 12990.478    13029.547    13458.299
 31  K2P+R2        6442.861     104 13093.722    13132.792    13561.544
 32  K2P+R3        6397.514     106 13007.027    13047.753    13483.845
 33  K2P+R4        6393.134     108 13002.268    13044.690    13488.083
 40  HKY+F         6862.604     105 13935.208    13975.101    14407.528
 41  HKY+F+I       6263.793     106 12739.586    12780.311    13216.404
 42  HKY+F+G4      6094.939     106 12401.877    12442.603    12878.695
 43  HKY+F+I+G4    6091.741     107 12397.482    12439.050    12878.798
 44  HKY+F+R2      6181.396     107 12576.792    12618.361    13058.108
 45  HKY+F+R3      6114.170     109 12446.340    12489.625    12936.653
 46  HKY+F+R4      6109.015     111 12440.029    12485.073    12939.338
 53  TNe           6958.714     103 14123.427    14161.684    14586.750
 54  TNe+I         6450.072     104 13108.144    13147.214    13575.965
 55  TNe+G4        6350.842     104 12909.684    12948.754    13377.506
 56  TNe+I+G4      6335.571     105 12881.143    12921.035    13353.462
 57  TNe+R2        6393.243     105 12996.487    13036.379    13468.807
 58  TNe+R3        6339.763     107 12893.525    12935.094    13374.842
 59  TNe+R4        6338.304     109 12894.607    12937.892    13384.920
 66  TN+F          6846.004     106 13904.008    13944.733    14380.826
 67  TN+F+I        6253.287     107 12720.574    12762.142    13201.890
 68  TN+F+G4       6081.067     107 12376.133    12417.702    12857.449
 69  TN+F+I+G4     6067.142     108 12350.283    12392.705    12836.098
 70  TN+F+R2       6155.400     108 12526.800    12569.221    13012.614
 71  TN+F+R3       6090.359     110 12400.719    12444.878    12895.530
 72  TN+F+R4       6087.098     112 12398.196    12444.135    12902.004
 79  K3P           6861.261     103 13928.522    13966.780    14391.845
 80  K3P+I         6332.141     104 12872.281    12911.351    13340.103
 81  K3P+G4        6267.328     104 12742.656    12781.726    13210.477
 82  K3P+I+G4      6251.279     105 12712.558    12752.451    13184.878
 83  K3P+R2        6283.522     105 12777.043    12816.936    13249.363
 84  K3P+R3        6253.746     107 12721.492    12763.061    13202.808
 85  K3P+R4        6253.223     109 12724.446    12767.731    13214.759
 92  K3Pu+F        6775.339     106 13762.679    13803.404    14239.496
 93  K3Pu+F+I      6198.399     107 12610.798    12652.366    13092.114
 94  K3Pu+F+G4     6053.181     107 12320.362    12361.931    12801.678
 95  K3Pu+F+I+G4   6049.062     108 12314.123    12356.545    12799.938
 96  K3Pu+F+R2     6114.286     108 12444.572    12486.993    12930.386
 97  K3Pu+F+R3     6058.030     110 12336.059    12380.219    12830.870
 98  K3Pu+F+R4     6057.044     112 12338.088    12384.026    12841.895
105  TPM2+F        6759.433     106 13730.866    13771.591    14207.684
106  TPM2+F+I      6210.136     107 12634.271    12675.839    13115.587
107  TPM2+F+G4     6062.575     107 12339.151    12380.719    12820.467
108  TPM2+F+I+G4   6058.256     108 12332.511    12374.933    12818.326
109  TPM2+F+R2     6117.779     108 12451.558    12493.980    12937.373
110  TPM2+F+R3     6066.374     110 12352.749    12396.908    12847.560
111  TPM2+F+R4     6065.546     112 12355.093    12401.031    12858.901
118  TPM2u+F       6759.443     106 13730.887    13771.612    14207.705
119  TPM2u+F+I     6210.147     107 12634.294    12675.862    13115.610
120  TPM2u+F+G4    6062.592     107 12339.184    12380.752    12820.500
121  TPM2u+F+I+G4  6058.177     108 12332.354    12374.775    12818.168
122  TPM2u+F+R2    6117.220     108 12450.440    12492.862    12936.254
123  TPM2u+F+R3    6066.360     110 12352.720    12396.879    12847.531
124  TPM2u+F+R4    6065.509     112 12355.018    12400.956    12858.826
131  TPM3+F        6824.106     106 13860.211    13900.937    14337.029
132  TPM3+F+I      6234.360     107 12682.720    12724.289    13164.037
133  TPM3+F+G4     6085.910     107 12385.820    12427.388    12867.136
134  TPM3+F+I+G4   6081.462     108 12378.924    12421.345    12864.738
135  TPM3+F+R2     6149.962     108 12515.923    12558.345    13001.738
136  TPM3+F+R3     6091.852     110 12403.705    12447.864    12898.516
137  TPM3+F+R4     6090.736     112 12405.472    12451.410    12909.279
144  TPM3u+F       6824.101     106 13860.202    13900.928    14337.020
145  TPM3u+F+I     6234.359     107 12682.718    12724.286    13164.034
146  TPM3u+F+G4    6085.903     107 12385.806    12427.375    12867.123
147  TPM3u+F+I+G4  6081.385     108 12378.771    12421.192    12864.585
148  TPM3u+F+R2    6149.898     108 12515.797    12558.218    13001.611
149  TPM3u+F+R3    6091.828     110 12403.657    12447.816    12898.468
150  TPM3u+F+R4    6090.731     112 12405.463    12451.401    12909.270
157  TIMe          6818.843     104 13845.686    13884.755    14313.507
158  TIMe+I        6294.994     105 12799.989    12839.881    13272.308
159  TIMe+G4       6216.575     105 12643.150    12683.043    13115.470
160  TIMe+I+G4     6197.622     106 12607.244    12647.969    13084.062
161  TIMe+R2       6244.150     106 12700.300    12741.025    13177.117
162  TIMe+R3       6200.560     108 12617.119    12659.541    13102.934
163  TIMe+R4       6200.540     110 12621.080    12665.239    13115.891
170  TIM+F         6759.369     107 13732.739    13774.307    14214.055
171  TIM+F+I       6187.382     108 12590.763    12633.185    13076.578
172  TIM+F+G4      6037.730     108 12291.460    12333.881    12777.274
173  TIM+F+I+G4    6025.878     109 12269.756    12313.041    12760.069
174  TIM+F+R2      6096.394     109 12410.789    12454.074    12901.101
175  TIM+F+R3      6038.890     111 12299.780    12344.824    12799.089
176  TIM+F+R4      6038.799     113 12303.598    12350.441    12811.904
183  TIM2e         6788.191     104 13784.382    13823.452    14252.203
184  TIM2e+I       6319.767     105 12849.534    12889.427    13321.854
185  TIM2e+G4      6230.810     105 12671.619    12711.512    13143.939
186  TIM2e+I+G4    6221.581     106 12655.162    12695.887    13131.980
187  TIM2e+R2      6259.574     106 12731.148    12771.873    13207.966
188  TIM2e+R3      6222.897     108 12661.795    12704.216    13147.609
189  TIM2e+R4      6222.819     110 12665.638    12709.797    13160.449
196  TIM2+F        6747.621     107 13709.242    13750.810    14190.558
197  TIM2+F+I      6200.823     108 12617.646    12660.067    13103.460
198  TIM2+F+G4     6048.379     108 12312.758    12355.179    12798.572
199  TIM2+F+I+G4   6037.509     109 12293.019    12336.304    12783.332
200  TIM2+F+R2     6103.267     109 12424.535    12467.820    12914.847
201  TIM2+F+R3     6048.814     111 12319.628    12364.671    12818.937
202  TIM2+F+R4     6048.807     113 12323.614    12370.458    12831.920
209  TIM3e         6871.941     104 13951.881    13990.951    14419.703
210  TIM3e+I       6392.385     105 12994.770    13034.662    13467.090
211  TIM3e+G4      6293.646     105 12797.291    12837.184    13269.611
212  TIM3e+I+G4    6280.547     106 12773.094    12813.819    13249.912
213  TIM3e+R2      6337.141     106 12886.282    12927.007    13363.100
214  TIM3e+R3      6282.387     108 12780.774    12823.195    13266.588
215  TIM3e+R4      6282.304     110 12784.607    12828.766    13279.418
222  TIM3+F        6805.917     107 13825.834    13867.402    14307.150
223  TIM3+F+I      6222.757     108 12661.514    12703.935    13147.328
224  TIM3+F+G4     6071.599     108 12359.198    12401.620    12845.013
225  TIM3+F+I+G4   6059.289     109 12336.579    12379.864    12826.891
226  TIM3+F+R2     6135.469     109 12488.937    12532.223    12979.250
227  TIM3+F+R3     6070.614     111 12363.228    12408.272    12862.537
228  TIM3+F+R4     6070.336     113 12366.671    12413.515    12874.977
235  TVMe          6727.051     105 13664.102    13703.994    14136.421
236  TVMe+I        6269.268     106 12750.535    12791.261    13227.353
237  TVMe+G4       6203.001     106 12618.002    12658.728    13094.820
238  TVMe+I+G4     6193.017     107 12600.034    12641.602    13081.350
239  TVMe+R2       6216.981     107 12647.962    12689.531    13129.278
240  TVMe+R3       6192.553     109 12603.106    12646.391    13093.419
241  TVMe+R4       6192.551     111 12607.102    12652.145    13106.411
248  TVM+F         6718.999     108 13653.998    13696.419    14139.812
249  TVM+F+I       6178.711     109 12575.422    12618.707    13065.734
250  TVM+F+G4      6045.421     109 12308.842    12352.127    12799.154
251  TVM+F+I+G4    6039.725     110 12299.451    12343.610    12794.262
252  TVM+F+R2      6094.770     110 12409.539    12453.698    12904.350
253  TVM+F+R3      6043.687     112 12311.374    12357.313    12815.182
254  TVM+F+R4      6043.660     114 12315.320    12363.080    12828.124
261  SYM           6689.707     106 13591.414    13632.139    14068.232
262  SYM+I         6231.967     107 12677.935    12719.503    13159.251
263  SYM+G4        6151.754     107 12517.508    12559.076    12998.824
264  SYM+I+G4      6141.032     108 12498.064    12540.485    12983.878
265  SYM+R2        6179.883     108 12575.765    12618.187    13061.580
266  SYM+R3        6141.979     110 12503.957    12548.116    12998.768
267  SYM+R4        6141.928     112 12507.857    12553.795    13011.664
274  GTR+F         6705.857     109 13629.714    13672.999    14120.027
275  GTR+F+I       6168.323     110 12556.647    12600.806    13051.458
276  GTR+F+G4      6030.295     110 12280.590    12324.750    12775.401
277  GTR+F+I+G4    6018.817     111 12259.633    12304.677    12758.942
278  GTR+F+R2      6080.464     111 12382.928    12427.971    12882.237
279  GTR+F+R3      6026.665     113 12279.331    12326.175    12787.637
280  GTR+F+R4      6026.629     115 12283.258    12331.944    12800.561
Akaike Information Criterion:           GTR+F+I+G4
Corrected Akaike Information Criterion: GTR+F+I+G4
Bayesian Information Criterion:         GTR+F+I+G4
Best-fit model: GTR+F+I+G4 chosen according to BIC

All model information printed to Troglosironidae_COI.mafft.fasta.model.gz
CPU time for ModelFinder: 39.188 seconds (0h:0m:39s)
Wall-clock time for ModelFinder: 39.314 seconds (0h:0m:39s)
Generating 1000 samples for ultrafast bootstrap (seed: 330747)...

NOTE: 3 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
Thoroughly optimizing +I+G parameters from 10 start values...
Init pinv, alpha: 0.000, 1.000 / Estimate: 0.000, 0.226 / LogL: -6030.372
Init pinv, alpha: 0.054, 1.000 / Estimate: 0.269, 0.388 / LogL: -6018.874
Init pinv, alpha: 0.107, 1.000 / Estimate: 0.272, 0.391 / LogL: -6018.848
Init pinv, alpha: 0.161, 1.000 / Estimate: 0.270, 0.389 / LogL: -6018.880
Init pinv, alpha: 0.214, 1.000 / Estimate: 0.273, 0.395 / LogL: -6018.835
Init pinv, alpha: 0.268, 1.000 / Estimate: 0.295, 0.431 / LogL: -6018.616
Init pinv, alpha: 0.321, 1.000 / Estimate: 0.328, 0.494 / LogL: -6018.605
Init pinv, alpha: 0.375, 1.000 / Estimate: 0.363, 0.586 / LogL: -6018.964
Init pinv, alpha: 0.428, 1.000 / Estimate: 0.374, 0.617 / LogL: -6019.129
Init pinv, alpha: 0.482, 1.000 / Estimate: 0.375, 0.620 / LogL: -6019.150
Optimal pinv,alpha: 0.328, 0.494 / LogL: -6018.605

Parameters optimization took 6.524 sec
Computing ML distances based on estimated model parameters... 0.024 sec
Computing BIONJ tree...
0.027 seconds
Log-likelihood of BIONJ tree: -6022.905
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 0.488 second
Computing log-likelihood of 98 initial trees ... 1.844 seconds
Current best score: -6014.832

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -6011.990
BETTER TREE FOUND at iteration 2: -6011.989
BETTER TREE FOUND at iteration 3: -6011.989
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 6: -6010.214
BETTER TREE FOUND at iteration 7: -6010.212
BETTER TREE FOUND at iteration 8: -6010.212
Iteration 10 / LogL: -6010.212 / Time: 0h:0m:12s
Iteration 20 / LogL: -6015.312 / Time: 0h:0m:15s
Finish initializing candidate tree set (19)
Current best tree score: -6010.212 / CPU time: 8.631
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 26: -6005.999
Iteration 30 / LogL: -6010.257 / Time: 0h:0m:19s (0h:1m:4s left)
Iteration 40 / LogL: -6015.386 / Time: 0h:0m:23s (0h:0m:51s left)
BETTER TREE FOUND at iteration 45: -6005.998
BETTER TREE FOUND at iteration 46: -6005.997
BETTER TREE FOUND at iteration 50: -6005.997
Iteration 50 / LogL: -6005.997 / Time: 0h:0m:27s (0h:0m:55s left)
Log-likelihood cutoff on original alignment: -6050.575
Iteration 60 / LogL: -6005.998 / Time: 0h:0m:31s (0h:0m:47s left)
BETTER TREE FOUND at iteration 64: -6005.997
Iteration 70 / LogL: -6005.997 / Time: 0h:0m:35s (0h:0m:48s left)
BETTER TREE FOUND at iteration 74: -6005.996
BETTER TREE FOUND at iteration 75: -6005.996
BETTER TREE FOUND at iteration 78: -6005.996
Iteration 80 / LogL: -6006.334 / Time: 0h:0m:39s (0h:0m:48s left)
UPDATE BEST LOG-LIKELIHOOD: -6005.996
Iteration 90 / LogL: -6007.123 / Time: 0h:0m:43s (0h:0m:42s left)
BETTER TREE FOUND at iteration 94: -6005.996
Iteration 100 / LogL: -6005.996 / Time: 0h:0m:47s (0h:0m:45s left)
Log-likelihood cutoff on original alignment: -6050.575
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.996
Iteration 110 / LogL: -6027.611 / Time: 0h:0m:51s (0h:0m:42s left)
Iteration 120 / LogL: -6012.830 / Time: 0h:0m:55s (0h:0m:37s left)
BETTER TREE FOUND at iteration 129: -6005.996
Iteration 130 / LogL: -6005.996 / Time: 0h:0m:58s (0h:0m:45s left)
Iteration 140 / LogL: -6005.996 / Time: 0h:1m:2s (0h:0m:40s left)
Iteration 150 / LogL: -6008.463 / Time: 0h:1m:6s (0h:0m:35s left)
Log-likelihood cutoff on original alignment: -6050.575
BETTER TREE FOUND at iteration 152: -6005.996
UPDATE BEST LOG-LIKELIHOOD: -6005.996
Iteration 160 / LogL: -6005.996 / Time: 0h:1m:10s (0h:0m:40s left)
BETTER TREE FOUND at iteration 161: -6005.995
Iteration 170 / LogL: -6006.333 / Time: 0h:1m:13s (0h:0m:39s left)
Iteration 180 / LogL: -6018.542 / Time: 0h:1m:17s (0h:0m:35s left)
BETTER TREE FOUND at iteration 184: -6005.995
Iteration 190 / LogL: -6005.995 / Time: 0h:1m:21s (0h:0m:40s left)
Iteration 200 / LogL: -6023.648 / Time: 0h:1m:24s (0h:0m:35s left)
Log-likelihood cutoff on original alignment: -6050.575
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
Iteration 210 / LogL: -6012.888 / Time: 0h:1m:29s (0h:0m:38s left)
BETTER TREE FOUND at iteration 213: -6005.995
Iteration 220 / LogL: -6005.995 / Time: 0h:1m:32s (0h:0m:39s left)
Iteration 230 / LogL: -6005.995 / Time: 0h:1m:37s (0h:0m:35s left)
BETTER TREE FOUND at iteration 234: -6005.995
UPDATE BEST LOG-LIKELIHOOD: -6005.995
Iteration 240 / LogL: -6015.006 / Time: 0h:1m:41s (0h:0m:39s left)
UPDATE BEST LOG-LIKELIHOOD: -6005.995
Iteration 250 / LogL: -6005.995 / Time: 0h:1m:45s (0h:0m:35s left)
Log-likelihood cutoff on original alignment: -6050.575
Iteration 260 / LogL: -6016.852 / Time: 0h:1m:49s (0h:0m:31s left)
BETTER TREE FOUND at iteration 263: -6005.995
UPDATE BEST LOG-LIKELIHOOD: -6005.995
Iteration 270 / LogL: -6005.995 / Time: 0h:1m:53s (0h:0m:39s left)
BETTER TREE FOUND at iteration 280: -6005.994
Iteration 280 / LogL: -6005.994 / Time: 0h:1m:57s (0h:0m:41s left)
Iteration 290 / LogL: -6005.995 / Time: 0h:2m:0s (0h:0m:37s left)
BETTER TREE FOUND at iteration 293: -6005.994
BETTER TREE FOUND at iteration 299: -6005.994
BETTER TREE FOUND at iteration 300: -6005.994
Iteration 300 / LogL: -6005.994 / Time: 0h:2m:4s (0h:0m:41s left)
Log-likelihood cutoff on original alignment: -6050.575
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.997
BETTER TREE FOUND at iteration 308: -6005.994
Iteration 310 / LogL: -6007.369 / Time: 0h:2m:8s (0h:0m:40s left)
Iteration 320 / LogL: -6008.191 / Time: 0h:2m:12s (0h:0m:36s left)
BETTER TREE FOUND at iteration 329: -6005.994
Iteration 330 / LogL: -6005.994 / Time: 0h:2m:16s (0h:0m:41s left)
Iteration 340 / LogL: -6006.481 / Time: 0h:2m:20s (0h:0m:36s left)
Iteration 350 / LogL: -6005.994 / Time: 0h:2m:25s (0h:0m:32s left)
Log-likelihood cutoff on original alignment: -6050.575
BETTER TREE FOUND at iteration 351: -6005.994
Iteration 360 / LogL: -6040.561 / Time: 0h:2m:29s (0h:0m:37s left)
Iteration 370 / LogL: -6005.994 / Time: 0h:2m:33s (0h:0m:33s left)
BETTER TREE FOUND at iteration 377: -6005.994
Iteration 380 / LogL: -6026.583 / Time: 0h:2m:36s (0h:0m:40s left)
BETTER TREE FOUND at iteration 387: -6005.994
Iteration 390 / LogL: -6005.994 / Time: 0h:2m:41s (0h:0m:40s left)
BETTER TREE FOUND at iteration 395: -6005.994
Iteration 400 / LogL: -6008.830 / Time: 0h:2m:45s (0h:0m:39s left)
Log-likelihood cutoff on original alignment: -6050.575
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
Iteration 410 / LogL: -6005.994 / Time: 0h:2m:49s (0h:0m:37s left)
BETTER TREE FOUND at iteration 414: -6005.994
BETTER TREE FOUND at iteration 420: -6005.994
Iteration 420 / LogL: -6005.994 / Time: 0h:2m:52s (0h:0m:41s left)
Iteration 430 / LogL: -6005.994 / Time: 0h:2m:56s (0h:0m:37s left)
BETTER TREE FOUND at iteration 431: -6005.994
Iteration 440 / LogL: -6009.437 / Time: 0h:3m:0s (0h:0m:37s left)
BETTER TREE FOUND at iteration 450: -6005.994
Iteration 450 / LogL: -6005.994 / Time: 0h:3m:4s (0h:0m:41s left)
Log-likelihood cutoff on original alignment: -6050.575
Iteration 460 / LogL: -6013.358 / Time: 0h:3m:9s (0h:0m:37s left)
Iteration 470 / LogL: -6005.994 / Time: 0h:3m:13s (0h:0m:33s left)
BETTER TREE FOUND at iteration 477: -6005.993
Iteration 480 / LogL: -6009.596 / Time: 0h:3m:18s (0h:0m:40s left)
BETTER TREE FOUND at iteration 486: -6005.993
Iteration 490 / LogL: -6005.995 / Time: 0h:3m:22s (0h:0m:39s left)
Iteration 500 / LogL: -6005.994 / Time: 0h:3m:26s (0h:0m:35s left)
Log-likelihood cutoff on original alignment: -6050.575
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
Iteration 510 / LogL: -6007.367 / Time: 0h:3m:30s (0h:0m:37s left)
UPDATE BEST LOG-LIKELIHOOD: -6005.993
Iteration 520 / LogL: -6008.984 / Time: 0h:3m:34s (0h:0m:33s left)
Iteration 530 / LogL: -6021.468 / Time: 0h:3m:38s (0h:0m:28s left)
Iteration 540 / LogL: -6005.993 / Time: 0h:3m:42s (0h:0m:24s left)
Iteration 550 / LogL: -6005.994 / Time: 0h:3m:46s (0h:0m:20s left)
Log-likelihood cutoff on original alignment: -6050.575
Iteration 560 / LogL: -6005.994 / Time: 0h:3m:51s (0h:0m:16s left)
Iteration 570 / LogL: -6005.994 / Time: 0h:3m:55s (0h:0m:12s left)
Iteration 580 / LogL: -6007.367 / Time: 0h:3m:59s (0h:0m:8s left)
TREE SEARCH COMPLETED AFTER 587 ITERATIONS / Time: 0h:4m:1s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
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Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -6005.993
2. Current log-likelihood: -6005.959
3. Current log-likelihood: -6005.931
4. Current log-likelihood: -6005.913
5. Current log-likelihood: -6005.899
6. Current log-likelihood: -6005.888
Optimal log-likelihood: -6005.879
Rate parameters:  A-C: 2.44002  A-G: 16.64983  A-T: 12.40259  C-G: 4.78151  C-T: 44.36170  G-T: 1.00000
Base frequencies:  A: 0.268  C: 0.181  G: 0.137  T: 0.414
Proportion of invariable sites: 0.303
Gamma shape alpha: 0.429
Parameters optimization took 6 rounds (0.217 sec)
BEST SCORE FOUND : -6005.879

Testing tree branches by SH-like aLRT with 1000 replicates...
0.585 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Troglosironidae_COI.mafft.fasta.splits.nex
Total tree length: 7.291

Total number of iterations: 587
CPU time used for tree search: 232.980 sec (0h:3m:52s)
Wall-clock time used for tree search: 235.235 sec (0h:3m:55s)
Total CPU time used: 240.552 sec (0h:4m:0s)
Total wall-clock time used: 242.982 sec (0h:4m:2s)

Computing bootstrap consensus tree...
Reading input file Troglosironidae_COI.mafft.fasta.splits.nex...
52 taxa and 521 splits.
Consensus tree written to Troglosironidae_COI.mafft.fasta.contree
Reading input trees file Troglosironidae_COI.mafft.fasta.contree
Log-likelihood of consensus tree: -6005.883

Analysis results written to: 
  IQ-TREE report:                Troglosironidae_COI.mafft.fasta.iqtree
  Maximum-likelihood tree:       Troglosironidae_COI.mafft.fasta.treefile
  Likelihood distances:          Troglosironidae_COI.mafft.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Troglosironidae_COI.mafft.fasta.splits.nex
  Consensus tree:                Troglosironidae_COI.mafft.fasta.contree
  Screen log file:               Troglosironidae_COI.mafft.fasta.log

Date and Time: Wed Nov  6 00:05:39 2019
